I agree with Augie. As long as the generator instructions don't require a specific size breaker, you don't have to worry about sizing the breaker to protect the generator.
I would expect a 125KVA generator to be capable of delivering 125KVA continuously, so personally, I'd probably add an extra 25% onto the generators current rating. In this case, that puts us at 433 amps. So I might even spec a 450 Amp breaker, unless the budget was really tight.
Also, the larger main breaker sometimes makes it a little easier to coordinate with the downstream beakers.
Steve