The question is can ground fault current from the PV system pass through the transformer to the main switchgear? Or does the transformer prevent ground fault current from the inverters from reaching the equipment on the primary? Yes, the separately derived system will have a neutral-to-ground bond, as usual. Also, the grounding electrode will be shared with the primary (through building steel).
I believe you understand that the idea behind 705.32 is that, with the inverter powering loads on the load-side of the main switch gear, a ground fault on that load side might not be detected by the ground fault protection device. Therefore the inverter must be connected on the supply side of the GFP device, or provide some protection of its own
Consider, then, that the ground fault may be on the low voltage side of the transformer, and that in that case the existence of the transformer is moot. Whether a ground fault on one side of the transformer will be detected on the other side is moot, because we're still worried about a ground fault that is in the same system as the switchgear with the primary GFP.
In your original post, where you say "normally I would need to use a GFCI breaker for the interconenction", others would say 'normally I would need to a connection on the supply side of the ground-fault protection". This is because GFP breakers that are suitable for backfeed are rarely encountered. That's a whole side discussion, but either way, I don't think the presence of a transformer in your design changes the reasoning.
I'm not an engineer, just repeating what I believe other engineers have said on this forum.