My 1st question is what is the purpose of the fused disconnect? Why is it fused instead of non-fused? The reason is you really need to break the neutral. A fused disconnect won't break the neutral and running it through a fuse on the fused disconnect would not be code compliant because if the neutral blew a fuse the hot would still be ..... hot.
My suggestion would be to use the switched neutral breaker and if you wanted a disconnect on the outside, why not use a 2-pole 20-amp switch instead of a fused disconnect? If you don't like the switch, use a NF disconnect (2-pole) and run the neutral through one of the blades on the NF disconnect.
On the conduit system, the sealoff needs to be the 1st fitting out of the ground. You also need to have a sealoff within 18" of the pump. There is a chance you will need 3 sealoffs. Please remember to put an explosion proof union between the sealoff and the pump. I've seen people not experienced in wiring these things install a nipple, sealoff, then union to attach their conduit system to the sealoff. That's backwards, the union needs to be between the sealoff and the pump so you can disconnect the pump and change if if necessary (in the future).