Fire alarm shutdown trumps all other control safeties on any AHU. Regardless of the position of the HOA (except off), the FA system will dictate the shutdown in the event of a fire. The FA isn't actually tied into the building automation system, but on it's own system. If it's a duct detector, just tie into the N.C. dry contacts on it, and you should be alright. Depending on the size of the AHU, there may be a supply and return duct detector that you may have to tie into. The idea behind it is whether the unit is in auto or in hand, it will be subject to FA shutdown in the event of a fire.