please explain further. Are you syncing phases from a generator to norm power (makes no sense to me), or is this between emer. poco service and norm service ? (I think I could understand that one)
In a normal installation generator to normal power = emergency to normal service no mater what the second source is. Except with a second utility source there will be some difference due to VD on the source carrying the load. I have seen as much as 15 VAC drop between load and non-loaded utility sources on a 480/277 VAC 3 phase Wye system
When you have two sources utility to utility or utility to generator it is possible to have correct rotation A-B-C and C-A-B but the phases out out of sync. With an ATS with an in phase monitor this will not allow the ATS to transfer when both sources are available.
So to verify phasing is correct A is A, B is B, C is C (and if you get 2 of the 3 correct, well by default the 3rd phase had better durn well be right).
To check this you would 1st need to meters, then connect one meter to the A phase utility source (typically normal) and A phase generator (typically emergency), then connect one lead of the second meter to B or C phase
utility/normal and one lead to B or C phase of generator/emergency. If the meters bar graph comes and goes in sync the phasing is correct, if the bar graph is minimum scale on one meter and max scale on another you have the phases crossed. Check all 3 phases till you decide what is correct.
If it is a utility to utility one meter would work, just check for "0" volts from A phase source one to A phase source two and B phase source one to B phase source two.