Should the raceway passing through a witches hat be seal-tite or rigid conduit? For many years I have seen seal-tite used. My boss stated it would rot and rigid should always be used. Seal-tite is sunlight-resistant, so I don't see what the problem is.
Assuming you do not exceed 360 degrees of bend, support it as required and comply with the rest of the NEC than IMO the NEC does not prohibit running LFMC out of a witches hat.
if it's going to an RTU or a fan, the flexibility of the liquitite will help reduce noise transmission. If it's installed carefully, I think the life is comparable to ridgid.