Mfg requirements can be lax or more restrictive than the NEC, however they cannot contraindicate any other codes. The only one that comes to mind recently was some piece of equipment that the manufacturer language, which was poorly translated, required a fused neutral. I cannot remember what code section that violates however, it did not get installed with a fuse neutral.
There are some truly ridiculous manufacturer requirements, the worst I've seen I think was on a spa that required certain colors of wire to be connected to the terminal blocks. Needless to say on that one, the wire was already run, the homeowner did not want to pay to rerun The Wire, and assumed all liability on warranty issues arising from using the wrong color wire.....