NETA has specifications set by members, and is often specified by some engineers and on Fed Gov. projects.
http://www.netaworld.org/
As mentioned Megger AVO has a nice publication.
http://www.megger.com/eu/index.php
This site talks about high voltage DC testing of cable (cable over 1000 VAC rating) but does touch on some "Megger" testing.
http://www.okonite.com/engineering/high-voltage-testing.html
The surge arrestors will cause problems with your readings. Assuming you are there to test only the cables the cables ends should be isolated and insulation around the exposed ends cleaned with an approved cable cleaner.
It is mandatory at my company that all feeder conductors be meggered prior to energizing. Every truck carries a megger and I train all new employees on their use. I also furnish them with literature (which I bet few read).
If I was king I would have all neutrals meggered prior to energizing panels to avoid neutral to ground shorts, and while you are doing the neutral hit the phase conductors.
I would bet that 95% of all buildings have multiple neutral to ground shorts downstream from the service or separately derived system neutral ground bond.
Busway should be meggered piece by piece as it is installed and the complete length should be meggered as a piece is added.