I really do not understand the situation you are trying to describe. If THEY asked you to get a license so that money could be saved, then WHO is pulling the permits now? Are they paying another contractor to pull permits? Is that contractor ever represented on site, while work is being done? Are you, essentially, using someone else’s license right now, so that a permit can be obtained, and so that you can do all the work yourself, without the person whose license is on the permit having anything to do with the work?
If that is the present situation, then I don’t like it, whether or not it is allowed under your local laws. The person responsible has, IMHO, a duty to have personal involvement in the work being done. How much involvement is certainly up for discussion. But if their only involvement is picking up the permit and collecting a fee, then it violates my sense of professionalism. The public, who will in time be working in (or at least visiting) the areas being constructed under such permits deserves more consideration for their safety.
Now let me discuss the future.
You are saying that you have applied for an additional license. I’m not sure what license that is, but I infer that it would allow you to do electrical work, starting with pulling permits, independent of any other contractor. When you get this license, your non-profit company plans to have you do all the work, including pulling permits, so that they don’t have to pay another contractor.
Do I have that part right?
If so, then it seems to me that you would be acting independently, under licenses that allow you to act independently. You would not be “selling your license” to the company, but rather would be using it in connection with your daily duties. Nothing wrong there.
My only comment is that, since you would be qualified to a higher level, and since this would be saving the company money, I think they owe you a raise. I think they should pay you a portion of the money they are saving.
Now tell me. Have I completely mis-read the situation? If so, can you explain it more clearly?