The programs convert this value for you, and it's tough to do without knowing the parameters of the luminaire. Different organizations use different general formulas to convert w/sq ft to lumens for different bulbs. None of it seems to be exact.
Playing with some numbers, say a 28w T8, with a multitude of dimensions ranging from hundreds of sq ft to 10's of thousands of sq ft, the lumens at 2w per sq ft with a 28w t8 with 2200 lumens, you're looking at between 140 and 160 footcandles. This is the appropriate amount of light for many environments, so it is quite possible that 2w/sq ft is the correct spec.