You're referring to the part of 250.92(B) that reads "Standard locknuts or bushings shall not be the only means for the bonding required by this section."
It seems to me that you are reading this as "standard locknuts shall not be any part of the means of bonding." Whereas the actual text uses the word "only," as in locknuts only.
I agree locknuts only does not comply with 250.92(B). But a locknut plus a threadless connector, in a combination that has been tested under UL 514(B) for resistance and current, is not a case of standard locknuts being the only means of bonding. It explicitly complies with 250.92(B) as specified in subsection (3).
Cheers, Wayne
P.S. Another example would be a standard locknut on one side, and a bonding locknut on the other side (the kind with a separate screw with sharp point that you use to jab the enclosure). That relies on a standard locknut as part of the assembly, but it is not a case of standard locknuts being the only means of bonding.
Now replace the bonding locknut with a threadless EMT connector. Same situation. Both comply with 250.92(B).