One bit of popular software in the MS office group is access. It's a relational database, so should be appropriate for any type tracking you want to do on bids. If you don't need that much "horsepower" you could use a spreadsheet program like excel. With anything though, it's garbage in, garbage out; so make sure the data is input correctly. None of these will pull the information out of your estimating program though and I don't know what that program is that you're using.
Both of these solutions will need user input to work. I my experience the more specialized you want, and the more automatic, it's relational to how expensive it will be.