Maybe. Show me the calculation or testing that says that 1 foot of FMC of the size used has a fundamental frequency well below the lowest frequency to be isolated (presumably 60 Hz in the US), and I'll agree with you. But if the fundamental frequency for 1 foot works out to be near or above 60 Hz, you'll need a longer length (which will reduce the fundamental frequency) for proper vibration isolation.
One comment, though: 348.30 Exception 2 is primarily about increasing the maximum distance from the termination to the first strap from 1' to 3', 4', or 5', depending on trade size (although in trade sizes 2-1/2" and larger, maybe you could use it to increase the distance between straps from 4.5' to 5.0'). Strapping the FMC to the transformer enclosure is not necessarily going to impede vibration isolation of the enclosure to the structure, and the 4-1/2' between straps is likely to be enough for vibration isolation. So while the wording of the exception often permits you to omit strapping to the enclosure (if the first strap to the building structure is within the specified limit), it may not be particularly useful to do so.
Cheers, Wayne