I get the feeling that, like the Pirate Code, the FDNY treats it "...more like a set of guidelines than rules", and YMMV depending on who your liaison with the department happens to be that day.
It's very frustrating indeed.
Recently I was at the NY Fire Alarm Association sponsored presentation on NEC 760 as it pertains to NYC. One of the FDNY inspectors was saying that despite the NYC Electrical Code requiring Rigid Conduit for Non Power Limited FA wiring, they're looking into changing it to just EMT (or accepting EMT anyways).
My biggest annoyance typically as an Engineer comes when I err on the side of caution and superior product (RMC instead of EMT, conduit below 8 feet not just above, a few additional strobes), and I get push back from an owner('s rep) nitpicking every last item.
Everyone is entitled to save money. But when it's not that much money and it all but guarantees no items on the letter of defect, isn't that worth it??
To those asking about why we still use fused cutouts in NYC....my theory is that it's to give Local 3 more work on the installation and job security changing fuses down the road. Conspiracy theory maybe, but how would Local 3 react to NYC going to circuit breakers?
Now naturally not every Local 3 electrician is in on this, this is just business. Most here agree that this outdated method should go away.
As someone who has practiced outside of NYC, I can tell you that most FPEs aren't knowledgeable enough in EE to tell you what neutral, EGC, GEC, bonding, 3 vs 4 pole ATS, fused disconnect vs cutout, etc. are, and it makes practicing in NYC harder without the help of an EE. So maybe the big name PEs in NYC who are licensed as EE instead of FPE want it this way.
Engineering wise, you could say that fuses are better than circuit breakers for short circuit protection. But at the same time until they introduced fused disconnect switches for the primary disconnect (instead of fused cut outs) you didn't have a service rated disconnect for your fire alarm system. So in theory your 30 amp FCO was exposed to same potential arc fault current as your 2000 or whatever amp service you had.
Also by introducing an additional "service", if you don't ground it properly you're introducing potential to ground faults that you wouldn't have with the standard method of using circuit breakers.