I see it the other way around...the specific rule is 310.15(B)(6) and it modifies other rules. I don't see a need for an exception to use SE or NM as the main power feeder using 310.15(B)(6). Note that 310.15(B)(6) does not change the ampacity of the cables, it only permits them to be used for specific sized services. This works just like 240.4(B) which does not change the ampacity of the conductor...it only permits an oversized OCPD.
As far as the substantiation, that was from the submitter, a representative of a cable manufacturer, not from the CMP. There was no technical substantiation for this change.