I don't have the document you are referencing but 110.14(C) is basically telling you that you have to take the temperature rating of the device at terminations into account when selecting conductor ampacities.
For an example, a #10 THWN-2 will have an ampacity of 40 amps in the 90°C column, however, if it is operated at that current the heat that the conductor generates would damage devices rated at a less temperature, so the termination temperature ratings much be taken into account. In the case of the #10, if you were terminating on devices rated at 60°C, your conductor final allowed ampacity would be 30 amps.
Since conduit fill and ambient only effect the insulation, you can use the 90° ampacity in derating.