The perception that it is Wye Delta but that it worked with two speeds and is an IEC motor likely means it is what they call a "Dahlander" motor, what we call a "2S1W" for 2speed 1winding. To the untrained eye, it appears similar to a Wye Delta starting scheme, but it is different in that it changes the number of motor poles, not just the connection pattern. If that was the case, the original control system would have had to introduce a delay when changing speeds because there was a phase shift between the Delta and Y-Y connections that made the two speeds happen. If all you did was remove the contactors, replace them with the drive and used the speed relays that turned on the different contactors to provide preset speed inputs to the VFD, you may have inadvertently left behind the pole changing delay in the relay logic and introduced it into the VFD's run command signal.
The motors have two windings, low and high, landing on different contactors. I am familiar with the "2S1W"; just don't see it often.
The drives are getting worse, starting over today, and looking at contact point at buss system. A new week, a clean slate; sure seems this could've been more straight forward than I have made it.