"Rarity" is not relevant to the secondary conductor protection rules.
Your're intentionally choosing a definition of "special" which buttresses your argument and your argument alone.
There are clear and explicit definitions of the word "special" in Merriam-Webster that support BOTH
(1) the interpretation of "particularity" AND (2) the interpretation of "rarity."
Both are acceptable interpretations of the word "special."
As for this being relevant to the NEC based discussion, we are having, I will NOT concede that the interpretation of "rarity" is irrelevant.
"Rarity" could absolutely be used to support the idea that unless this transformer is manufactured with a single coil and only two wire leads, that it does not qualify as "2-wire (single voltage) secondary" per the availability of such a product. It's entirely plausible that we are not supposed to go without secondary protection except for "rare" instances in which a particular product, manufactured a particular way is utilized.
To your point, "particularity" could also be absolutely used to support the idea that "special" means as long as this particular transformer is wired according to its' nameplate to produce (1) two points of attachment for the secondary conductors and (2) the ability to produce only one voltage output that it is acceptable as a "2-wire (single voltage) secondary."
Both interpretations are absolutely plausible. Me, I'm going to err on the side of caution and assume this does NOT meet the parameters defined until I hear from a more official source.
However, all input is appreciated and your arguments are valid
We can simply agree to disagree.
If a more official source discerns that I am wrong, I will be the first to admit it and even thank you posing a valid argument which forced me to question my own view and learn something new.
For now, I am going to err on the side of being excessive. I would rather learn that I could have saved on cost, versus learn that I was installing something not to the proper safety regulations.