The code section that we are talking about does not apply to the 15kV cable. The sizing rules for pull and junction boxes used with conductors over 600 volts are found in 314.71. Yes, I know it does not specify conduit bodies in that section, and am not sure where the code addrersss conduit bodies for over 600 volts but you would have to comply with the bending radius rule in 300.34.
What fill rules are you talking about? The conduit fill rules have nothing to do with the number of wires permitted to be installed in a conduit body that does not have the spacing that is required by 314.28(A)(1) or (2).
There is nothing in the code that says you can use the equivalent cross sectional area for the purpose of installing more conductors than what is marked on the fitting. The rule in 314.28(A)(3) acts as an exception to the 6x conduit spacing rule that is in 314.28(A)(2). The rule is very specific in stating that you can use a conduit body with a conduit spacing less than 6 times the trade size of the conduit and with conductors #4 and larger only when the fitting is marked with "The maximum number and maximum size of conductors permitted". There is nothing in the code to even suggest that some sort of field calculation can be done to increase the number of conductors that are permitted in the conduit body.
The bending of the conductor while it is being installed is the very reason for the 6 x conduit spacing rule.