You don't need an arbitrary reference point to determine the phase relationship between two equal ac circuits connected in series. You don't even need an oscilloscope. A simple voltmeter will do. As learned in the study of basic ac circuits. If the circuits are series aiding, (120v +120v =240v), they are in phase with each other. If the circuits are series opposing, (120v - 120v = 0v), they are 180? out of phase with each other. A center tapped transformer is electrically equivalent to two identical single output transformers connected as series aiding, (in phase). If you use an oscilloscope to determine phase relationship, you have to connect it correctly to obtain a valid result. Improper connection of test equipment will give invalid results. You have to have opposite polarity between two conductors in order to have a potential difference. This does not make them 180? out of phase with each other. If you understand a sine wave, (graph), then you know that it indicates a changing potential between two conductors, not a changing voltage on one conductor. I believe using a common conductor, neutral, in two circuits causes a lot of the confusion as currents will be out of phase in it. However it ends at the breaker panel. From there you have individual neutral conductors that carry the same current as the so called 'hot' legs. Don