Well my boss said that as long as there's a difference potential current will flow. He said the source does not matter for current to flow. His idea that the earth is an opposite polarity then a transformer up on the pole and that is why current will flow to ground. He said that the neutral on the pole in the ground are both equal things so current will travel and seek either one because they are both essentially "negative" He does not believe that current travels back through the earth up to the source where it was derived. So essentially he saying that if a fault happens current will seek any path to a different potential, not a path back to source.
So my experiment shows with two different sources that current will not flow unless it's able to seek out it's own source from where it came from. The first battery is the source, the second battery would be a separately derived source. If his theory is right since I found a neutral of another source that there's also a difference of potential between the first batteries negative in the second battery is positive – current should still flow. My argument is that is incorrect because current is going to seek its home, where it came from, or it will not flow period.
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I don't know if there is a confusion in semantics with your boss, or he is just trying to confuse you. Let me try to go back to the basics.
Voltage is a difference in potential. This would be equivalent to two tanks of water connected with a hose that have different pressure, or different height for example.
Zero volts is a reference point not an absolute value, in other words, it is only zero volts in reference to the other point you are measuring.
Any time there is a difference in voltage that is great enough to overcome a resistance between them current will flow. It will flow as long as the voltage is great enough to overcome that resistance. Period. Simple as that, end of story.
If I had an internal charge of 1000 volts in reference to say, the ground rod in my house, but I also had a 500 volt charge in reference to the door know on my wooden door. I reached out and touch the door, I would get a static zap. This is current flow, but at the speed of light, the door know and I would now have a 0 volt difference. The charge would still remain 1000 volts to the ground rod though.
And, by the way, your last sentence. You apparently didn't hook up a voltmeter to your two batteries, because there isn't a difference in potential between them unless it is a "static' type difference as described above. You should read zero volts between the two batteries, no matter which terminals you read between.
Do realize though, that everything we talk about has a but... When we want to start getting technical, we can talk about insignificant flows, over time, dirt, humidity causing flow, and any of thousand of other variables. But the bottom line is current flow is from a source through a load and back to the source.